FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2274580
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTATGG11100.00157969127.09746271
CTTTAGC17751.5525133E-46.05238151
CTTGGAT16754.8320735E-45.9861371
CTTAAAT21609.947413E-65.96832131
GGTAGAT15850.00162463475.87418371
CAAGCCC16150.00212882095.74263433
GTCAGTT20451.749185E-45.6035091
CACAAAA36101.9514118E-85.356611
CCGATTG17550.0056880985.2845333
CAATAAT35859.363794E-85.19418761
CTCAAAT20800.00132008575.16489361
ACTTTCG18250.0089842275.0818386
CTTCAGT18400.0094437755.0600981
Produced by FastQC (version 0.11.5)