FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548472
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGATCC1800.00476613819.7875333
CTAAAAC2750.002882569815.6048141
TGTGTGC2950.00472899314.4858568
CTTAAAG3250.00873462713.2040741
CACCAAC5150.00122816911.1102231
GTCGAAG4750.00852294210.5400931
CTTCAAA10458.412617E-47.52863841
CTTCCGG11954.414713E-47.1821321
Produced by FastQC (version 0.11.5)