FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences683436
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCAGTGG2950.001241341324.941498145
ACTCCGC3800.002917021712.17126752
GACTTCA4050.004725215511.4107656
CCCGCAT4300.007118835610.7994971
GATTCGT4500.00997285410.3195191
CGTCTTA3155.5724002E-59.343164145
TAGTGAA3050.00132889598.112246140-144
TATCTCG3800.0014343677.7449913145
CTTCCAT10700.00240036856.8199761
CTCGTCT3950.0057158226.278754135-139
CTGGAAA14300.00118111476.0308881
CTTATCT6150.00105091915.6324043140-144
Produced by FastQC (version 0.11.5)