FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1270930
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGCT10507.753821E-47.58828741
CTCCGGT10100.00444892567.1716491
CCCGCAG13351.7635828E-47.05346441
GTTTGCT11850.00279171726.7237991
GCGATTT10850.0092294126.65122133
TTGATCT12400.0046664476.40180063
ATTTGAT23254.295891E-65.9193091
CTGGAAC15050.00518220345.77544071
CTTTCAT22459.5443495E-55.48495341
GTTAAAA17500.0045959175.38078551
GATTTAA17600.00514056775.3297965
ATCAAAT22857.1869773E-45.0719411
CTTCAAG20150.0043198975.03261141
Produced by FastQC (version 0.11.5)