FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005004284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2483158
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCCT19551.3014458E-56.25014641
CTTTAAT18453.7484555E-56.2332081
CACAGAT20955.7220786E-66.17556241
AACTATT12850.0072955676.13302662
CCCCGTT14250.0030771076.0527731
CTAAAAT14500.00373644925.94841531
TTTAATC16000.0018107885.82114842
GTTACAA17457.7929563E-45.766611
CCCAGAA21304.845344E-55.73663661
GTTTCGT19154.1543783E-45.63002731
CCCGCAT22108.4759784E-55.5289751
CTCCGAG15650.0087011715.5113111
GTCCGAT17100.00383738525.4643091
GTCCACG22651.227945E-45.39471771
ATATTGC30806.9678026E-75.3451516
GTAAAGA25101.0299274E-45.1545031
GTTCAAA22506.4590346E-45.1112311
TTTAAAG19800.0039862915.0658012
TTACAAG20050.0046587645.00263642
CCGATTC22908.7700447E-45.00112063
Produced by FastQC (version 0.11.5)