FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005004442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65019574
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA138450.011.05916655-59
GAGCGTC617900.09.37476359
TCGCCGT162250.09.374372555-59
GCCGTAT167000.09.29006555-59
AGAGCGT665950.08.8942948
GTCGCCG186000.08.36446655-59
CGTATCA195150.08.0538760-64
GATCGGA743350.07.8396321
AAGAGCG760850.07.8135117
ATCGGAA757200.07.7555662
TGGTCGC204200.07.7470650-54
TCGGAAG772000.07.57822043
CGGAAGA795700.07.43448974
GTGGTCG215900.07.33394950-54
GCGTCGG65400.07.316684145
CCGTATC191000.06.45252260-64
TCTCGGT282050.05.896517345-49
GGTCGCC211600.05.646287455-59
CGGTGGT305850.05.475721450-54
CTCGGTG317200.05.339098545-49
Produced by FastQC (version 0.11.5)