FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005004492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61954038
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA69500.09.24186255-59
TCGCCGT90050.07.13280855-59
GAGCGTC401150.06.92168149
GCCGTAT98800.06.85331155-59
AGAGCGT444000.06.38443578
GTCGCCG106450.06.088389455-59
CGTCGTG320350.06.020675145
AGATCGG518650.05.9975133145
GCGTCGG47050.05.856151145
TGGTCGC117850.05.63477750-54
GATCGGA493000.05.6169381
ATCGGAA505450.05.53722522
AAGAGCG520150.05.4915637
TCGGAAG521000.05.41325473
AGCGTCG336550.05.364609145
CGGAAGA536600.05.3234424
GCGTCGT321700.05.274519140-144
CGTATCA130100.05.271380460-64
GTCGTGT332650.05.1877346145
GTGGTCG136100.05.145526450-54
Produced by FastQC (version 0.11.5)