EGAF00005004498 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005004498
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58203952
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	3995	0.0	8.347039	145
CGCCGTA	4180	0.0	7.215206	55-59
AGCGTCG	21125	0.0	7.1376953	145
CGTCGTG	18965	0.0	6.9568067	145
GCGTCGT	19110	0.0	6.259495	140-144
GTCGTGT	21245	0.0	5.9713526	145
GATCGGA	33660	0.0	5.922567	145
GAGCGTC	26480	0.0	5.8585105	145
AGATCGG	35940	0.0	5.607356	145
TCGCCGT	5695	0.0	5.5504017	55-59
CGTGTAG	21820	0.0	5.481767	145
AGAGCGT	30340	0.0	5.399882	145
TAGATCG	13815	0.0	5.299829	145
ATCGGAA	35120	0.0	5.2514424	140-144
TCGGAAG	36835	0.0	5.08173	140-144
GTCGCCG	6850	0.0	5.0590506	55-59