FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005004518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66782310
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA69900.08.58458255-59
GAGCGTC291650.08.1495449
AGAGCGT340400.07.1314318
GCGTCGG48750.06.988184145
GATCGGA349050.06.9738341
TCGCCGT91600.06.7882555-59
ATCGGAA371050.06.7568752
TCGGAAG385700.06.5379213
AAGAGCG394750.06.29641537
GCCGTAT105400.06.06448655-59
CGGAAGA412850.06.05531644
GTCGCCG110500.05.574714755-59
AGATCGG367000.05.1943445145
TGGTCGC133550.05.056827550-54
Produced by FastQC (version 0.11.5)