EGAF00005004522 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005004522
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66618868
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	7200	0.0	10.885385	55-59
GAGCGTC	33605	0.0	9.612834	9
AGAGCGT	37340	0.0	8.712029	8
TCGCCGT	9295	0.0	8.665715	55-59
GATCGGA	40565	0.0	8.09126	1
ATCGGAA	42240	0.0	7.873681	2
TCGGAAG	43540	0.0	7.605137	3
GCCGTAT	10800	0.0	7.578857	55-59
AAGAGCG	44115	0.0	7.4726844	7
GTCGCCG	11150	0.0	7.301977	55-59
CGGAAGA	45865	0.0	7.2828064	4
TGGTCGC	12835	0.0	6.5914307	50-54
CGTATCA	13845	0.0	6.069433	60-64
GTGGTCG	14115	0.0	6.024485	50-54
GCGTCGG	5050	0.0	5.7378654	145
CGTCGTG	24735	0.0	5.5644655	145
AGATCGG	42455	0.0	5.3406887	145
CCGTATC	12745	0.0	5.3314595	60-64
GGTCGCC	13535	0.0	5.019883	55-59