EGAF00005004525 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005004525
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56403708
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	12960	0.0	10.594575	40-44
TATGCCG	11480	0.0	10.533138	45-49
ATGCCGT	14985	0.0	9.259527	45-49
TCTCGTA	13120	0.0	8.896119	40-44
GATCGGA	33485	0.0	8.042664	1
ATCGGAA	35145	0.0	7.721935	2
TCGGAAG	36085	0.0	7.575402	3
CGGAAGA	37370	0.0	7.3149147	4
CGTCTTC	19040	0.0	6.6402793	50-54
TGCCGTC	14655	0.0	6.539572	45-49
TCGTATG	14815	0.0	6.5375247	40-44
CGTATGC	13065	0.0	6.4255114	40-44
ATCTCGT	15970	0.0	6.4187884	40-44
AGATCGG	34535	0.0	6.0036054	145
GCCGTCT	14990	0.0	5.561601	45-49
CCGTCTT	19350	0.0	5.537328	50-54