EGAF00005004533 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005004533
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	71630427
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	12045	0.0	9.473583	45-49
CTCGTAT	14310	0.0	7.9843903	40-44
CGTATGC	14260	0.0	7.5546722	45-49
TCTCGTA	14470	0.0	7.525347	40-44
ATGCCGT	16010	0.0	7.14549	45-49
GATCGGA	42240	0.0	7.0594764	1
ATCGGAA	45180	0.0	6.7140055	2
CGACACT	17505	0.0	6.5931883	30-34
TCGGAAG	46405	0.0	6.5319533	3
AGATCGG	44005	0.0	6.2945285	145
GCCGTCT	17310	0.0	6.2319093	50-54
CGGAAGA	48665	0.0	6.183333	4
ACGACAC	17800	0.0	6.174386	30-34
GTCACGA	19515	0.0	5.8921714	25-29
ATCTCGT	18345	0.0	5.8093133	40-44
CGTCTTC	21850	0.0	5.5807147	50-54
AGTCACG	23675	0.0	5.22432	25-29
CACGACA	21510	0.0	5.197069	30-34
CCGTCTT	22550	0.0	5.118136	50-54