FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005004570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54010198
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGGCG56050.015.1402159
CGCCGTA79900.011.97629545-49
GCGTCGG31650.011.914356145
AGCGTCG248850.010.2595159
GTCGCCG105500.09.30419840-44
GCCGTAT107750.09.12300245-49
GAGCGGC91650.09.1011718
ATCGGGA59150.08.7331471
GAGCGTC297750.08.6722168
AGAGCGG109750.08.124877
CCGTATC124300.08.08327745-49
GGTCGCC123750.08.04922840-44
TGGTCGC121600.07.893455540-44
AGAGCGT336150.07.8718297
ATCGGAA389850.07.8569091
TCGGAAG387850.07.85077672
AAGAGCG391300.07.81830936
CGGAAGA409150.07.56611353
CGTATCA131850.07.532442645-49
GTGGTCG134000.07.292859640-44
Produced by FastQC (version 0.11.5)