EGAF00005004701 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005004701
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68404779
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	15935	0.0	9.595862	45-49
ATCGGAA	54545	0.0	9.299063	1
TCGGAAG	55550	0.0	9.125903	2
CGGAAGA	57720	0.0	8.851803	3
CTCGTAT	18605	0.0	8.382023	40-44
CGTATGC	18505	0.0	8.262846	40-44
TCTCGTA	17620	0.0	7.9128957	40-44
ATGCCGT	19920	0.0	7.7635202	45-49
TCGTATG	20915	0.0	7.678001	40-44
TGCCGTC	21200	0.0	7.3563104	45-49
GCCGTCT	21375	0.0	7.126564	45-49
CGTCTTC	25485	0.0	6.2107415	50-54
AGAGCAC	91730	0.0	5.7510533	7
GAGCACA	98255	0.0	5.5609803	8
AGCACAC	95925	0.0	5.484531	9
AGATCGG	51995	0.0	5.184636	145
GAAGAGC	103340	0.0	5.18206	5
GATCGGA	50020	0.0	5.1720343	145