FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005004709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68167667
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA433850.022.680941
TCGGAAG444500.022.1248072
CGGAAGA468750.020.8159183
TATGCCG173550.015.72419345-49
CTCGTAT193650.014.16737440-44
CGTATGC197300.013.83913340-44
TCTCGTA185450.013.38636440-44
ATGCCGT214800.012.76528745-49
TGCCGTC218400.012.65445945-49
TCGTATG221250.012.47870140-44
AGAGCAC826250.012.3355897
GCCGTCT224350.012.08617445-49
AGCACAC867700.011.671129
GAGCACA885700.011.3766378
GAAGAGC933350.011.0366085
GATCGGA349500.010.7902651
CGTCTTC267900.010.39674550-54
CGTCTGA331900.08.2341715-19
AAGAGCA1289950.08.1541856
ATCTCGT229400.07.93235935-39
Produced by FastQC (version 0.11.5)