EGAF00005004712 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005004712
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	76232440
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	25400	0.0	13.979705	9
GAGCGTC	32170	0.0	11.21796	8
AGAGCGT	38195	0.0	9.581213	7
ATCGGAA	38915	0.0	9.412215	1
TCGGAAG	40875	0.0	9.13247	2
CGGAAGA	45265	0.0	8.164693	3
CGCCGTA	12275	0.0	8.099546	45-49
AAGAGCG	46930	0.0	8.014015	6
GTCGCCG	15325	0.0	6.676898	40-44
GCCGTAT	16115	0.0	6.4303384	45-49
TGGTCGC	17705	0.0	6.0003777	40-44
CCGTATC	18515	0.0	5.7533627	45-49
GGTCGCC	18420	0.0	5.6809125	40-44
CGTATCA	19425	0.0	5.6405168	45-49
TCGCCGT	13330	0.0	5.555988	40-44
GTGGTCG	19310	0.0	5.4190784	40-44