EGAF00005004809 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005004809
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74530617
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	11340	0.0	8.937635	45-49
CTCGTAT	13890	0.0	7.526469	40-44
TCTCGTA	13575	0.0	7.2418275	40-44
GATCGGA	42700	0.0	7.0033526	1
ATGCCGT	15620	0.0	6.804269	45-49
ATCGGAA	45295	0.0	6.6905184	2
TCGGAAG	46280	0.0	6.6107826	3
CGTATGC	13805	0.0	6.34394	45-49
CGGAAGA	49225	0.0	6.229959	4
AGATCGG	44585	0.0	6.097888	145
TAGATCG	17435	0.0	6.029524	145
CGTGTAG	18895	0.0	5.747746	30-34
CCGTGTA	19175	0.0	5.5655117	30-34
GCCGTCT	16390	0.0	5.467264	50-54
ACACGTC	33720	0.0	5.203131	145
CGTCTTC	21780	0.0	5.1062026	50-54