FastQCFastQC Report
Wed 1 May 2024
EGAF00005004895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269807478
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT9154240433.92878680701356No Hit
CCAGGGCA7971227029.544129240183626No Hit
AATAATGG5833481021.620901849132586No Hit
GTGTCATC3749311713.896248272258784No Hit
AATAATGA6032440.22358312841128888No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)