FastQCFastQC Report
Thu 9 May 2024
EGAF00005004900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences290456385
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC10316071035.51676441886447No Hit
GGCGAGTA7344754225.28694351132959No Hit
CAAATACG6151504621.178754944567668No Hit
ACTTCTAT4664839916.0603799431023No Hit
CCTTCTAT11980200.41246123751075403No Hit
GCTTCTAT5943110.20461281992475394No Hit
TCTTCTAT5840980.20109662936140998No Hit
TTGCGCGA3773390.1299124479566872No Hit
GTGCGCGC3745580.12895498923186005No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)