FastQCFastQC Report
Wed 1 May 2024
EGAF00005004901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences277589202
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC8011769028.86196200095708No Hit
GCGGATAG6805778924.517448268755064No Hit
CATCTCCA6703466524.14887341331094No Hit
TTATCGTT5840115821.038699480824906No Hit
GCGGCTAG7035630.25345474353141445No Hit
CATCTCAA4749330.1710920297252773No Hit
TTATCGTA3914520.14101845359244197No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)