FastQCFastQC Report
Sat 11 May 2024
EGAF00005004909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences237932311
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG7301838730.688722642634275No Hit
TCCAATGC6277578026.383881926822454No Hit
GTAGCACA5411416722.74351338519971No Hit
CGTTTGAT4506859018.94176953545414No Hit
TCCAATGA2745590.11539374322304632No Hit
AAGCGCTA2698790.11342679725411485No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)