FastQCFastQC Report
Wed 1 May 2024
EGAF00005004914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences235174063
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC6905065129.361507863220442No Hit
TGCACAAA5851814824.882908962626544No Hit
CTTTGCGG5234166622.256564066761054No Hit
GCAGTTCT5225110822.218057269351167No Hit
AAGCAGTA3113190.13237811858529655No Hit
CTTTGCGA3074740.13074315937638073No Hit
GCAGTTCA2562050.1089427110845978No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)