FastQCFastQC Report
Wed 1 May 2024
EGAF00005004920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences240570356
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC7604661931.61096831065919No Hit
AAGATCAT5710178523.7360022030312No Hit
TGATCTCA5416905822.516929725123738No Hit
CCTGAAGG5034060720.925523758214002No Hit
TGATCTAA3617980.15039176314807468No Hit
CCTGAAGA3315150.13780376165715114No Hit
GTCCGGTA2534010.10533342686660863No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)