FastQCFastQC Report
Wed 1 May 2024
EGAF00005004925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences256617222
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTCGC9616731037.4750023597403No Hit
GTGTCGCT5731496922.334810015206227No Hit
CCCAATAG5042474719.649790690977085No Hit
TATCGATA5013483119.536814641380538No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)