FastQCFastQC Report
Wed 1 May 2024
EGAF00005004928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences241266221
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT7571645531.382948962424372No Hit
GGATGGGC5988922624.822880613693535No Hit
CCGATTAA5443449922.562005893066978No Hit
AATCAATG4856836420.130610824297694No Hit
TTCGCCCA5650700.23421015907568757No Hit
CCGATAAA3276230.13579314942724618No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)