FastQCFastQC Report
Wed 1 May 2024
EGAF00005004933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences283174535
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGTCACG8572351230.272323745494983No Hit
CACGAGAA7263918425.65173595146894No Hit
AGTCGCTT6281554522.182624931298996No Hit
GTAATTGC5757658920.332544732526888No Hit
AGTCGCGT14005370.4945843735560474No Hit
AGTCGCTA6760980.2387566381984171No Hit
TCGTCACA5043140.17809299130658057No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)