FastQCFastQC Report
Thu 9 May 2024
EGAF00005004936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298322739
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGCGTA8566927528.716977890176853No Hit
GGGCAAAT8065093927.034794354043523No Hit
AAATGTGC6627767722.21677007329971No Hit
TCTATCCG6307947721.144709656208942No Hit
TCTATCCA4103550.13755404679359692No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)