FastQCFastQC Report
Thu 2 May 2024
EGAF00005004941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences331151818
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATACCC10019116130.255355868225976No Hit
TGTCTATG9491853128.663146581306098No Hit
ACCACGAA8080971424.40261825770801No Hit
GTGGGTGT5081280615.344263035270428No Hit
CAATACCA10880750.3285728601979168No Hit
TGTCTATA5930660.17909187501425705No Hit
ACCACAAA4963650.14989046504343817No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)