FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005004944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences326627046
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC12870039239.402858267897386No Hit
CTGACTGA6957633221.30146074921181No Hit
ACCGTATG6601804820.212058005753754No Hit
GATTAGAT5573053317.06243670954303No Hit
GAGTAGAT16387570.5017211587554816No Hit
TGACGCCA12154740.3721290122435238No Hit
ACCGTATA4780420.14635713908394468No Hit
GCTTAGAT4686670.1434868929990568No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)