FastQCFastQC Report
Wed 1 May 2024
EGAF00005004949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences252838654
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC7863798731.102043044415197No Hit
TGGTGTTT6232616524.650568263189694No Hit
GATCAGCA6084953724.066548384646914No Hit
ACAACAGG4717910218.65976631880029No Hit
ACAACAGA8148340.32227429908719574No Hit
TGGTGTTA7242670.2864542223041576No Hit
GATCACCA4591630.18160316578809188No Hit
CTCGTCAA2779140.10991752867027997No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)