FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005004993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005004993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40390707
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC248150.010.3986859
GATCGGA275700.09.7737931
CGCCGTA66050.09.7455955-59
AGAGCGT272750.09.5935258
ATCGGAA285950.09.2563592
TCGGAAG301450.08.82482053
TCGCCGT78000.08.38262455-59
AAGAGCG323750.08.3061527
CGGAAGA319800.08.2049734
GCCGTAT85900.07.69608255-59
GTCGCCG92300.07.05249355-59
TGGTCGC101850.06.71935950-54
CGTATCA104050.06.506865560-64
GTGGTCG113100.06.08944750-54
CCGTATC100150.05.529800460-64
GACGGTT123800.05.211572630-34
Produced by FastQC (version 0.11.5)