FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005005044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105762384
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCGAC70300.017.702481
GCGACCA105150.012.8247443
GATCGGA824700.011.90444851
ATCGGAA861150.011.5607032
TCGGAAG874250.011.2618363
GGCGACC115500.011.2373412
TATGCCG239900.011.18705945-49
CGGAAGA923900.010.7263324
CGACCAC134450.010.136894
CTCGTAT272250.09.61806940-44
TCTCGTA267150.09.26980740-44
CGTATGC277900.08.94778145-49
ATGCCGT299950.08.87006845-49
GCCGTCT316600.07.996814750-54
CGTCTTC381100.07.236944750-54
AGAGCAC1451750.07.23076778
ATCTCGT334300.07.030474740-44
ACCGAGA194950.06.95386179
GAGCACA1561750.06.81895739
TGCCGTC310100.06.710175550-54
Produced by FastQC (version 0.11.5)