EGAF00005005057 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005005057
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	65378463
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	31810	0.0	8.066658	9
CGCCGTA	8440	0.0	7.868028	55-59
AGAGCGT	36635	0.0	7.1229305	8
GATCGGA	37010	0.0	7.064888	1
ATCGGAA	39415	0.0	6.732189	2
TCGCCGT	10135	0.0	6.695221	55-59
TCGGAAG	40835	0.0	6.5684533	3
AAGAGCG	43175	0.0	6.3125944	7
CGGAAGA	43860	0.0	6.2967443	4
GCCGTAT	11705	0.0	5.970607	55-59
AGATCGG	38940	0.0	5.7179365	145
GTCGCCG	12120	0.0	5.6824265	55-59
AGCGTCG	25375	0.0	5.516304	145
CGTCGTG	23340	0.0	5.3447146	145
GCGTCGG	4810	2.7284841E-11	5.277398	145
TGGTCGC	13765	0.0	5.224485	50-54
GTCGTGT	25930	0.0	5.174473	145
GCGTCGT	23295	0.0	5.0237145	140-144