FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46964512
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA329950.018.0044691
ATCGGAA352900.017.3180372
TCGGAAG357300.016.959273
CGGAAGA366350.016.557484
TATGCCG104600.014.82456845-49
CTCGTAT119400.013.02105740-44
CGTATGC117900.013.01703745-49
TCTCGTA118750.012.57794640-44
TATCTCG125250.011.51878940-44
ATGCCGT134800.011.37432945-49
GCCGTCT138350.011.13489450-54
AGAGCAC604850.010.5063348
ATCTCGT144200.010.37822240-44
GAGCACA644300.09.9417659
CGTCTTC170300.09.47987550-54
TCGTATG132550.09.47914945-49
CCGTCTT171600.09.21381550-54
GAAGAGC683300.09.1728266
TGCCGTC136650.09.0887350-54
AAGAGCA916750.07.2637867
Produced by FastQC (version 0.11.5)