EGAF00005005314 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005005314
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55555248
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	10835	0.0	7.7218733	55-59
GCGTCGG	6020	0.0	7.466741	145
GAGCGTC	46560	0.0	6.927981	9
TCGCCGT	12635	0.0	6.6906614	55-59
GCCGTAT	13150	0.0	6.5719805	55-59
AGAGCGT	51535	0.0	6.2732167	8
CGTCGTT	2485	2.1142787E-6	5.834982	145
GTCGCCG	14835	0.0	5.766871	55-59
GATCGGA	56120	0.0	5.7195263	1
ATCGGAA	57555	0.0	5.6684785	2
CGTATCA	15565	0.0	5.653674	60-64
AAGAGCG	59595	0.0	5.570751	7
TCGGAAG	58655	0.0	5.548859	3
CGGAAGA	60645	0.0	5.4265428	4
TGGTCGC	16675	0.0	5.365036	50-54
CGTCGTG	36980	0.0	5.1169305	145
GTGGTCG	17810	0.0	5.0964026	50-54