EGAF00005005367 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005005367
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66808894
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4975	0.0	10.20023	145
CGTCGTG	41540	0.0	6.282623	145
AGCGTCG	45575	0.0	6.171775	145
GAGCGTC	53230	0.0	5.8425956	145
GCGTCGT	42495	0.0	5.7489724	140-144
CGTGTAG	42450	0.0	5.7039247	145
GTCGTGT	43370	0.0	5.582928	145
ATCGGAA	70230	0.0	5.481215	145
GATCGGA	69645	0.0	5.4335737	145
AGATCGG	73855	0.0	5.3790503	145
TCGTGTA	41490	0.0	5.3640537	140-144
CGCCGTA	6740	0.0	5.3138256	55-59
CGGAAGA	71665	0.0	5.209609	145
TAGATCG	25200	0.0	5.206945	145
TCGGAAG	70855	0.0	5.0236106	145
AGAGCGT	58550	0.0	5.0021815	145