EGAF00005005369 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005005369
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	69084491
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6020	0.0	12.044394	145
CGTCGTG	42330	0.0	6.3034887	145
GAGCGTC	54510	0.0	6.0123425	145
AGCGTCG	46580	0.0	5.9774117	145
GCGTCGT	43055	0.0	5.877373	145
AGATCGG	75950	0.0	5.7948523	145
TCGGAAG	72345	0.0	5.732828	145
ATCGGAA	71335	0.0	5.7021894	145
CGCCGTA	6895	0.0	5.635565	55-59
CGTGTAG	43230	0.0	5.4174976	145
CGGAAGA	72530	0.0	5.338325	145
TCGTGTA	42230	0.0	5.295656	140-144
GATCGGA	70965	0.0	5.2925744	145
GTCGTGT	44080	0.0	5.201718	140-144
TAGATCG	26150	0.0	5.0741215	145
AGAGCGT	59000	0.0	5.0293303	140-144