EGAF00005005389 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005005389
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57766237
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	28670	0.0	10.846433	9
GATCGGA	31330	0.0	10.2771015	1
CGCCGTA	10120	0.0	9.957405	55-59
AGAGCGT	32360	0.0	9.878264	8
ATCGGAA	33760	0.0	9.621273	2
TCGGAAG	35785	0.0	9.1151285	3
TCGCCGT	11800	0.0	8.613465	55-59
CGGAAGA	38640	0.0	8.385345	4
AAGAGCG	39760	0.0	8.203831	7
AGCGTCG	22835	0.0	8.031133	9
GCCGTAT	12870	0.0	7.89735	55-59
GTCGCCG	14130	0.0	7.1520824	55-59
TGGTCGC	15585	0.0	6.9310827	50-54
CGTATCA	15115	0.0	6.76243	60-64
GTGGTCG	16965	0.0	6.333094	50-54
AGGTCGT	17000	0.0	6.0552726	35-39
GGTCGTG	19390	0.0	5.4584503	35-39
AGATCGG	32310	0.0	5.2792478	145
TCTCGGT	21385	0.0	5.254426	45-49