EGAF00005005453 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005005453
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	53311652
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	5005	0.0	8.951682	55-59
GAGCGTC	26080	0.0	7.394551	9
TCGCCGT	6475	0.0	7.143337	55-59
AGAGCGT	29300	0.0	6.582142	8
GTCGCCG	7685	0.0	6.3204966	55-59
GCGTCGG	3755	5.456968E-12	6.1782107	145
CGTCGTG	19865	0.0	6.1676655	145
GATCGGA	32120	0.0	6.1298265	1
AAGAGCG	34375	0.0	5.9056616	7
AGATCGG	33875	0.0	5.885401	145
GCCGTAT	7850	0.0	5.8736453	55-59
ATCGGAA	33755	0.0	5.8645134	2
TCGGAAG	34765	0.0	5.75598	3
CGGAAGA	36030	0.0	5.634365	4
GCGTCGT	19755	0.0	5.394803	140-144
TGGTCGC	9055	0.0	5.3321767	50-54
AGCGTCG	21230	0.0	5.327179	145
GTCGTGT	22715	0.0	5.0746613	145