EGAF00005005524 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005005524
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60808706
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	26230	0.0	9.300405	1
TATGCCG	9315	0.0	8.888067	45-49
ATCGGAA	28770	0.0	8.724517	2
TCGGAAG	30240	0.0	8.46246	3
CGGAAGA	33180	0.0	7.690772	4
CTCGTAT	11160	0.0	7.4313498	40-44
TCTCGTA	11365	0.0	7.144214	40-44
CGTATGC	11255	0.0	6.660382	45-49
ATGCCGT	13235	0.0	6.310338	45-49
AGATCGG	27695	0.0	6.2595754	145
ATCGACG	1320	0.008536481	6.0411887	4
CCGTGTA	14545	0.0	5.851437	30-34
CGTGTAG	14395	0.0	5.7311106	30-34
TAGATCG	11180	0.0	5.7093835	145
GCCGTCT	13895	0.0	5.395024	50-54
ATCTCGT	14825	0.0	5.1834273	40-44
ACGACGC	1960	0.0030367158	5.1781363	6
GTCACCG	16670	0.0	5.131554	25-29
CGTCTTC	17910	0.0	5.0194654	50-54