FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539614
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAAGT1902.2081326E-422.868931
CTCTTAA1850.005076894519.572511
CAAACAA5950.00367772889.7369121
CTCCTTT9352.1933802E-59.2943251
CTTCAAA8558.6425076E-48.4699741
CTTCAAT7800.00356654228.3559551
ATTGATT8050.0048806388.0701652
CTTTCAA9650.0028505147.5044851
AAGATTT10200.0050529017.0767783
Produced by FastQC (version 0.11.5)