FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18250288
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTA122100.033.60744145
TCTCGTT93300.026.88618145
AGTCACC191350.023.56658145
TCGGAAT89150.022.770435145
CGTATGG48150.022.434927145
ACGTCTT103900.021.352095145
GACATCG172150.019.667288145
TGCCGTG106500.019.12896145
ATGCCGG99200.019.074953145
AGACATG387600.018.966574145
GAGCACC321150.018.443731145
CCAGTCC292150.017.594421145
CGCCAAC80350.017.504532145
CGTCTTG82350.016.90333145
ACACGTG95900.016.63178145
AAGAGCC326800.015.107747145
CGCCAAT43100.013.625184145
CTGAACA286350.013.596019145
TCGTATT56550.013.205027145
CTCGTAT440450.012.789661145
Produced by FastQC (version 0.11.5)