FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15706669
Sequences flagged as poor quality0
Sequence length151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTA107200.031.448092145
ATTGGCG62850.030.22262145
TCTCGTT82200.023.901964145
GCTCATG303200.019.440056145
TGCCGTG105100.018.763002145
TCGGAAT80200.018.712513145
ACGTCTT94350.018.365051145
GAGCACC291850.018.034872145
CGTCTTG75400.016.730698145
ACACGTG80900.015.951724145
TCGCGTT18100.015.62148145
CACGTCG74650.015.539115145
AAGAGCC304350.015.293181145
CATTGGG130100.015.101779145
CTCATCG153150.014.9591255145
CGTATGG49350.014.250192145
ATGCCGG89500.013.60888145
CTGAACG75600.013.521767145
CTGAACA236950.013.187325145
CGTCTTA59200.011.634241145
Produced by FastQC (version 0.11.5)