FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences921538
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGAAT6751.6435642E-49.9991591
CTCTCAT5700.0046201299.4728871
CTCAAAT6850.0020842368.86786651
TTCAGAC7807.067527E-48.6446667
AGTTGGT6250.0098431848.6392741
CTTCCAA10552.0542518E-47.6770791
CTCATTT8900.00257632377.5836321
CAAAGAT13457.4336367E-67.5272481
CTTCATT13054.0452862E-57.24077031
CTTCCTT15507.252622E-66.96715641
CTTCAAT12008.9929084E-46.74943261
CCTCTTT13003.0234916E-46.74943261
CTTGTTT13253.8146495E-46.62208461
CTTCAAA14208.8306284E-46.17905761
CTTGAAA16709.897026E-45.65820651
CTTTGAT14550.0077818945.5665421
CTTCCAT14750.0090439715.49106361
TCATTTT18656.84921E-45.4237842
CAAAGAA19008.6857966E-45.32849931
Produced by FastQC (version 0.11.5)