FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences583499
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGTC3954.2541084E-415.704049145
CCCGCGA2850.003417550815.2112951
CCTCCAT6405.997489E-410.160671
CTTTTAA8550.00830667.6056481
CTTCAAT9700.00306683927.44883061
TATTGTT10300.0056956056.990277
CTTTTTT23151.2478267E-86.8664381
CGCCCAC4455.3814246E-45.177956660-64
GTACCGA3750.00839621855.1115723135-139
Produced by FastQC (version 0.11.5)