FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1110156
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTACGA4850.009298949510.4184181
CCCACTT6200.00531179369.3141611
CTTTAAT18451.2914825E-108.6073951
CTCAAAA14851.3994668E-67.77748161
CAAGAAC13302.13774E-57.5983951
CCTCCAC10250.0053081127.0424151
CTTCGAT10400.00611164756.94084171
CAACCGC10750.0084175996.7148611
CTCATTT12909.5382397E-46.7148611
CTTATAT15501.6000953E-46.5199131
CTATAAT12700.00596729676.25222251
CCTTGAA12700.00596729676.25222251
CTTTGGA15450.00108665896.0737981
CTCCGGA13100.0082305016.0613151
CTTTGAT22501.6872695E-55.77478031
AAGATTT27704.7072172E-75.7106213
CCTCCTT15300.0064590265.6615491
CTTTCAA18300.00134780255.52233081
CTTTCAG17350.00432306765.40865561
CTTTATT24355.9493977E-55.3360391
Produced by FastQC (version 0.11.5)