FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005005923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005005923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1657403
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAATT9352.0146294E-59.3645821
CACTAAT6500.00717290868.9803941
CTCAGAT8356.3547154E-48.7384081
CCCTTGT12457.676776E-68.2049791
CTTTCGT14851.1916691E-67.86162571
CCCATGT8400.0065066737.8177541
CTCCCAA12050.00308322186.660771
CAACGAT16855.8647165E-56.49546341
CTTCCGA17459.507525E-56.27212331
CTTTAAG14100.00230809776.20984751
GTTCGAT13050.00708166746.15036631
GTCAAAT15459.555969E-46.1395091
CTCAAAG14600.00340922975.9971811
CTTCAAT28157.736162E-85.9616741
CTATAAT22101.0646389E-55.9429081
AAGATTC19558.1724706E-55.9073045
AAGATTG22351.519639E-55.8131445
CTTAAAT16650.00233949725.69702241
CTTCGTT16900.00279257355.61274671
CCCGTTC15600.00711294545.61274671
Produced by FastQC (version 0.11.5)