FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1901901
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGAGT6000.0040853649.6161239
AGTGAGT6100.0044928989.5059641
CACACGT6400.0069501689.0151157
CTAAGAT6700.00970864958.6546831
GTCTTAA9000.00142756378.0536631
CTTCGAA15751.8698235E-46.442931
CGAACAA15107.854981E-46.2402561
GTTTTAT29204.5711204E-96.2057341
AATTTAC16000.00167083745.86028675
GTTGAAC16150.00176106035.83454231
CTCCGCT16600.00244332875.67637731
AGATCTT16850.00308648125.5656884
CTGCTAT18250.00123741725.56033751
CTTTAAT23201.5510319E-45.3112521
GTTATAA17750.0053910745.3086121
ATTTACC20550.00102365085.26430036
CTTCGAC18050.0065615155.22038031
AGATTTA22958.0998224E-45.02936034
CTCCATT21650.00191474995.0219151
Produced by FastQC (version 0.11.5)