FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1321986
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGATTC7350.0021959728.8176073
CGATTCT9402.4039653E-48.4622841
CTACGAC8550.0082586517.61200671
CACAAAT11950.00310277546.6565241
GTTCAAT12350.00437923946.4409281
CTCCGGT13550.00163110786.4041971
CATTTGC20101.2606883E-45.7321765
CAATTCC17900.00105083475.6321036
GTTCAAA15450.00705602865.61662531
CTTTCAT19805.99535E-45.4783381
CAAAGAT19600.00312421845.165291
ATTATTG18250.008050175.12951235
CTTTGAT21650.00197290895.0102121
Produced by FastQC (version 0.11.5)