FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005006078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005006078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536951
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTACAG4050.002923498212.1668771
CAAAACT4600.007557868510.7121411
CGAAAAC6801.1555376E-410.352071
TATATAA6951.4877033E-410.0965755
TCCCCCC1350.0081042878.848011110-114
CCCCCCC1450.00245419058.71090855-59
CTGGAAG9000.00189892967.82156321
AAAATTC9350.00284881287.5049413
Produced by FastQC (version 0.11.5)